The collars are used to train dogs through the use of small shocks, but have come under fire from animal rights activists and opposition politicians.
MSPs are Holyrood are scheduled to debate proposed new laws by Tory MSP Maurice Golden on Thursday which had been drawn up to introduce a ban.
"After carefully considering the concerns raised by stakeholders and the public about electronic training collars for dogs, particularly the ready availability on the internet of cheap devices which can be bought by anyone and used to deliver painful electric shocks, I have decided to take steps to effectively and promptly ban their use in Scotland," Ms Cunningham said
“Causing pain to dogs by inappropriate training methods is clearly completely unacceptable and I want there to be no doubt that painful or unpleasant training for dogs will not be tolerated."
He said: “Electric shock collars are cruel, unnecessary and ineffective. I’m delighted that the Scottish Government has today taken a stand against cruelty and taken decisive action against their use.”
The collars are already banned in Wales, but remain in use in England. The ban will be introduced through guidance issued under the Animal Health and Welfare (Scotland) Act 2006.
“I’m glad that our campaigning has finally forced the SNP to see sense on this issue; that electric shock collars are harmful, and the expert advice is clear that electrocuting dogs doesn’t help train them."